realDB: A Genome Database for Red Algae

Rhodophyta
               
Bangiophyceae
               
               
Florideophyceae
         
   
Rhodellophyceae
     
             
Porphyridiophyceae
   
             
Compsopogonophyceae
               
               
Stylonematophyceae
             
       
Cyanidiophyceae
 

* flagship genome selected by realDB

Overview

         
Species Taxonomy Genome Transcriptome Data Source Note
Pyropia yezoensis Bangiophyceae
Bangiales
Bangiaceae
+ http://nrifs.fra.affrc.go.jp/ResearchCenter/5_AG/genomes/nori/
Porphyra umbilicalis Bangiophyceae
Bangiales
Bangiaceae
+ http://genome.jgi.doe.gov/Porlis_FD/Porlis_FD.info.html
Porphyra purpurea  Bangiophyceae
Bangiales
Bangiaceae
+ https://www.ncbi.nlm.nih.gov/sra/?term=Porphyra+purpurea assembled and
annotated in
 this study
Calliarthron tuberculosum Bangiophyceae
Corallinales
Corallinaceae
+ http://dbdata.rutgers.edu/data/plantae/
Compsopogon coeruleus Compsopogonophyceae
Compsopogonales
Compsopogonaceae
+ marinemicroeukaryotes.org
Madagascaria erythrocladiodes Compsopogonophyceae
Erythropeltidales
Erythrotrichiaceae
+ marinemicroeukaryotes.org
Cyanidioschyzon merolae Cyanidiophyceae
Cyanidiales
Cyanidiaceae
+ http://merolae.biol.s.u-tokyo.ac.jp/
Galdieria sulphuraria Cyanidiophyceae
Cyanidiales
Galdieriaceae
+ http://genomics.msu.edu/galdieria/sequence_data.html
Galdieria phlegrea Cyanidiophyceae
Cyanidiales
Galdieriaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRP028903 assembled and
annotated in
this study
Chondrus crispus Florideophyceae
Gigartinales
Gigartinaceae
+ http://phylomedb.org/phylome_96
Ceramium kondoi Florideophyceae
Ceramiales
Ceramiaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041130 assembled and
annotated in
this study
Heterosiphonia pulchra Florideophyceae
Ceramiales
Dasyaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357798 assembled and
annotated in
this study
Symphyocladia latiuscul Florideophyceae
Ceramiales
Rhodomelaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041133 assembled and
annotated in
this study
Neosiphonia japonica Florideophyceae
Ceramiales
Rhodomelaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041132 assembled and
annotated in
this study
Dumontia simplex Florideophyceae
Gigartinales
Dumontiaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357789 assembled and
annotated in
this study
Mazzaella japonica Florideophyceae
Gigartinales
Gigartinaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357796 assembled and
annotated in
this study
Ahnfeltiopsis flabelliformis Florideophyceae
Gigartinales
Phyllophoraceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041138 assembled and
annotated in
this study
Eucheuma denticulatum Florideophyceae
Gigartinales
Solieriaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357793 assembled and
annotated in
this study
Betaphycus philippinensis Florideophyceae
Gigartinales
Solieriaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357788 assembled and
annotated in
this study
Kappaphycus alvarezii Florideophyceae
Gigartinales
Solieriaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357790 assembled and
annotated in
this study
Gloiopeltis furcata Florideophyceae
Gigartinales
Endocladiaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5974837 assembled and
annotated in
this study
Gracilaria vermiculophylla Florideophyceae
Gracilariales
Gracilariaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041143 assembled and
annotated in
this study
Gracilaria chouae Florideophyceae
Gracilariales
Gracilariaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041142 assembled and
annotated in
this study
Gracilaria blodgettii Florideophyceae
Gracilariales
Gracilariaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=ERR2041144 assembled and
annotated in
this study
Grateloupia livida Florideophyceae
Halymeniales
Halymeniaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357795 assembled and
annotated in
this study
Grateloupia turuturu Florideophyceae
Halymeniales
Halymeniaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357794 assembled and
annotated in
this study
Grateloupia catenata Florideophyceae
Halymeniales
Halymeniaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5357797 assembled and
annotated in
this study
Grateloupia filicina Florideophyceae
Halymeniales
Halymeniaceae
+ https://www.ncbi.nlm.nih.gov/sra?term=SRR5192950 assembled and
annotated in
this study
Gracilaria lemaneiformis Florideophyceae
Gracilariales
Gracilariaceae
+ https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2976382 assembled and
annotated in
this study
Porphyridium cruentum Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ https://www.ncbi.nlm.nih.gov/sra/SRX242706[accn] assembled and
annotated in
this study
Porphyridium purpureum Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ http://cyanophora.rutgers.edu/porphyridium/
Porphyridium aerugineum Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ marinemicroeukaryotes.org
Timspurckia oligopyrenoides Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ marinemicroeukaryotes.org
Erythrolobus australicus Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ marinemicroeukaryotes.org
Erythrolobus madagascarensis Porphyridiophyceae
Porphyridiales
Porphyridiaceae
+ marinemicroeukaryotes.org
Rhodella maculata Rhodellophyceae
Rhodellales
Rhodellaceae
+ marinemicroeukaryotes.org
Rhodosorus marinus Stylonematophyceae
Stylonematales
Stylonemataceae
+ marinemicroeukaryotes.org