realDB: A Genome Database for Red Algae

Pyropia yezoensis

Overview
1. P. yezoensis is one of the representative species of red algae.
2. It is one of the algae species and has important scientific research value, which is one of the algae species and its scientific problems.
3. It is one of the dominant species in winter and spring, and it has important ecological value.


Data Source
From Yoji Nakamura, at National Research Institute of Fisheries Science, Fisheries Research Agency, Yokohama, Kanagawa, Japan


Reference Publication(s)
Nakamura Y, et al. The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis). PLoS ONE 8 (3): e57122.


Statistics of genome

Total contig size (bp)

43483963

Number of contigs

46634

Average contig length (bp)

932

Contig N50 (bp)

1669

Contig coverage

166

Percentage of mapped cDNA read pairs (%)

97.9

G+C content (%)

63.6

Percentage of repetitive sequences (%)

1.4

Genome or contig size (Mb)

43

All genes predicted Validated genes

Gene content

10327 1314

Gene density (kb/gene)

4.2 -

Average CDS length (bp)

849 1247

Average exon legth (bp)

634 755

Average intron length (bp)

304 300

Introns per gene

0.3 0.7